The mission of Mahanaim is to be a Christian institution that strives to teach students the wisdom of God hidden in the sixty-six books of the Bible, cultivating them to become the world's leaders for the next generation. Mahanaim also aims to accomplish the will of God through academic programming that challenges students to excellence, and instills the mindset of Christ, which encompasses service, love, and compassion.

In addition to its commitment to building tomorrow's leaders, Mahanaim will also become a center that develops medical treatment and produces cures for life-threatening diseases. The administration and faculty at Mahanaim will achieve all these ends through quality instruction, scholarship, spiritual guidance, student development, service to the community, and nurturing the talent fit for its goals in higher education and research in order to take the lead in contributing to the general health of mankind.

In all these aspects, we are taking the steps with the faith that God is helping us. We believe God will greatly strengthen Mahanaim so it becomes a university that serves as a world mission center and a source of leaders in this era of globalization. Students at Mahanaim will experience an academic and spiritual growth that empowers them to create a more peaceful, blessed, and beautiful world, that is rooted in God.